6T3S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6T3S_001 | 1/A/30:38 | T-loop with 2 stacked bulged bases | geometric HL_3IGI_001 HL_33597.3 | |
| HL_6T3S_002 | 1/A/47:61 | Pseudoknot geometry with G-bulge | geometric HL_3IGI_002 HL_94488.1 | |
| HL_6T3S_003 | 1/A/89:94 | No text annotation | homologous HL_5J02_003 NA | |
| HL_6T3S_004 | 1/A/135:141 | No text annotation | homologous HL_5J02_004 NA | |
| HL_6T3S_006 | 1/A/274:279 | GNRA | geometric HL_3IGI_006 HL_34789.4 | |
| HL_6T3S_007 | 1/A/305:314 | No text annotation | ||
| HL_6T3S_008 | 1/A/337:344 | No text annotation | ||
| HL_6T3S_009 | 1/A/368:373 | Other HL | geometric HL_3IGI_009 HL_64036.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6T3S_005 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6T3S_001 | 1/A/10:14, 1/A/257:262 | No text annotation | geometric IL_3IGI_001 IL_99498.1 | |
| IL_6T3S_002 | 1/A/70:74, 1/A/113:117 | No text annotation | homologous IL_5J02_002 NA | |
| IL_6T3S_003 | 1/A/76:79, 1/A/103:111 | No text annotation | homologous IL_5J02_003 NA | |
| IL_6T3S_004 | 1/A/82:84, 1/A/99:100 | Single bulged G | geometric IL_5TBW_037 NA | |
| IL_6T3S_005 | 1/A/128:129, 1/A/234:238 | No text annotation | homologous IL_5J02_004 NA | |
| IL_6T3S_016 | 1/A/149:156, 1/A/221:225 | No text annotation | ||
| IL_6T3S_019 | 1/A/158:161, 1/A/216:219 | No text annotation | ||
| IL_6T3S_009 | 1/A/171:175, 1/A/190:195 | No text annotation | ||
| IL_6T3S_010 | 1/A/267:271, 1/A/282:286 | No text annotation | geometric IL_3IGI_010 IL_96788.1 | |
| IL_6T3S_011 | 1/A/296:298, 1/A/320:321 | No text annotation | ||
| IL_6T3S_012 | 1/A/298:303, 1/A/316:320 | No text annotation | ||
| IL_6T3S_013 | 1/A/332:334, 1/A/349:350 | Major groove intercalation | geometric IL_1U6B_010 IL_46637.2 | |
| IL_6T3S_018 | 1/A/332:335, 1/A/346:350 | No text annotation | ||
| IL_6T3S_014 | 1/A/334:335, 1/A/346:349 | Major groove platform with intercalated tWH | geometric IL_5DCV_006 IL_94991.2 | |
| IL_6T3S_015 | 1/A/365:366, 1/A/375:378 | Multiple bulged bases | geometric IL_3IGI_013 IL_44609.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6T3S_006 | No text annotation | ||
| IL_6T3S_017 | No text annotation | ||
| IL_6T3S_007 | No text annotation | ||
| IL_6T3S_008 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6T3S_001 | 1/A/133:135, 1/A/141:145, 1/A/229:230 | No text annotation | ||
| J5_6T3S_001 | 1/A/24:28, 1/A/40:43, 1/A/65:68, 1/A/119:123, 1/A/243:247 | No text annotation |
Problematic loops
No problematic loops
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