IL_6T3S_009

3D structure

PDB id

6T3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

AUGAG*CAAAGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T3S|1|A|A|171
6T3S|1|A|U|172
6T3S|1|A|G|173
6T3S|1|A|A|174
6T3S|1|A|G|175
*
6T3S|1|A|C|190
6T3S|1|A|A|191
6T3S|1|A|A|192
6T3S|1|A|A|193
6T3S|1|A|G|194
6T3S|1|A|U|195

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains