IL_6T4Q_023

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_023 not in the Motif Atlas

Homologous match to IL_8C3A_025

Geometric discrepancy: 0.0846

The information below is about IL_8C3A_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07235.3

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6T4Q|1|C1|G|725
6T4Q|1|C1|G|726
6T4Q|1|C1|G|727
6T4Q|1|C1|G|728
*
6T4Q|1|C1|U|741
6T4Q|1|C1|G|742
6T4Q|1|C1|C|743
6T4Q|1|C1|A|744
6T4Q|1|C1|C|745

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18-A

Chain Lb

60S ribosomal protein L29