IL_6T4Q_030

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_030 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.0834

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6T4Q|1|C1|U|834
6T4Q|1|C1|G|835
6T4Q|1|C1|A|836
6T4Q|1|C1|A|837
6T4Q|1|C1|G|838
*
6T4Q|1|C1|U|855
6T4Q|1|C1|G|856
6T4Q|1|C1|G|857
6T4Q|1|C1|A|858
6T4Q|1|C1|G|859

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LR

60S ribosomal protein L19-A

Chain Lp

60S ribosomal protein L43-A