IL_6T4Q_040
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 6T4Q|1|C1|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T4Q_040 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1098
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
6T4Q|1|C1|G|999
6T4Q|1|C1|C|1000
6T4Q|1|C1|G|1001
6T4Q|1|C1|A|1002
6T4Q|1|C1|A|1003
6T4Q|1|C1|U|1004
*
6T4Q|1|C1|A|1046
6T4Q|1|C1|A|1047
6T4Q|1|C1|A|1048
6T4Q|1|C1|C|1049
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- 60S ribosomal protein L10
- Chain LT
- 60S ribosomal protein L21-A
Coloring options: