IL_6T4Q_053
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6T4Q|1|C1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T4Q_053 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.1555
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6T4Q|1|C1|U|1218
6T4Q|1|C1|C|1219
6T4Q|1|C1|U|1220
6T4Q|1|C1|A|1221
6T4Q|1|C1|G|1222
6T4Q|1|C1|A|1223
6T4Q|1|C1|C|1224
6T4Q|1|C1|A|1225
6T4Q|1|C1|G|1226
*
6T4Q|1|C1|C|1283
6T4Q|1|C1|C|1284
6T4Q|1|C1|G|1285
6T4Q|1|C1|A|1286
6T4Q|1|C1|A|1287
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LS
- 60S ribosomal protein L20-A
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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