IL_6T4Q_072

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_072 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.1075

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6T4Q|1|C1|U|1702
6T4Q|1|C1|U|1703
6T4Q|1|C1|A|1704
6T4Q|1|C1|U|1705
6T4Q|1|C1|C|1706
6T4Q|1|C1|A|1707
*
6T4Q|1|C1|U|1737
6T4Q|1|C1|C|1738
6T4Q|1|C1|U|1739
6T4Q|1|C1|U|1740
6T4Q|1|C1|A|1741
6T4Q|1|C1|U|1742
6T4Q|1|C1|G|1743

Current chains

Chain C1

25S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34-A