3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
6T4Q|1|C1|G|2335
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T4Q_077 not in the Motif Atlas
Homologous match to IL_8C3A_083
Geometric discrepancy: 0.0677
The information below is about IL_8C3A_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06455.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6T4Q|1|C1|A|1901
6T4Q|1|C1|G|1902
6T4Q|1|C1|U|1903
6T4Q|1|C1|C|1904
6T4Q|1|C1|G|1905
6T4Q|1|C1|G|1906
*
6T4Q|1|C1|C|2333
6T4Q|1|C1|U|2334
6T4Q|1|C1|G|2335
6T4Q|1|C1|U|2336

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LV
60S ribosomal protein L23-A

Coloring options:


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