IL_6T4Q_082

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6T4Q|1|C1|U|2159, 6T4Q|1|C1|U|2175, 6T4Q|1|C1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_082 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0804

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6T4Q|1|C1|C|2156
6T4Q|1|C1|G|2157
6T4Q|1|C1|A|2158
6T4Q|1|C1|U|2159
6T4Q|1|C1|G|2160
6T4Q|1|C1|G|2161
*
6T4Q|1|C1|U|2173
6T4Q|1|C1|G|2174
6T4Q|1|C1|U|2175
6T4Q|1|C1|U|2176
6T4Q|1|C1|G|2177
6T4Q|1|C1|A|2178
6T4Q|1|C1|C|2179
6T4Q|1|C1|G|2180

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

60S ribosomal protein L2-A

Chain Lp

60S ribosomal protein L43-A