IL_6T4Q_087

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_087 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1182

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6T4Q|1|C1|U|2211
6T4Q|1|C1|C|2212
6T4Q|1|C1|A|2213
6T4Q|1|C1|A|2214
6T4Q|1|C1|A|2215
6T4Q|1|C1|G|2216
6T4Q|1|C1|U|2217
*
6T4Q|1|C1|A|2228
6T4Q|1|C1|A|2229
6T4Q|1|C1|C|2230
6T4Q|1|C1|C|2231
6T4Q|1|C1|A|2232
6T4Q|1|C1|A|2233
6T4Q|1|C1|G|2234

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain Li

60S ribosomal protein L36-A