IL_6T4Q_089

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6T4Q|1|C1|A|2281, 6T4Q|1|C1|C|2287, 6T4Q|1|C1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_089 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0821

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6T4Q|1|C1|C|2277
6T4Q|1|C1|C|2278
6T4Q|1|C1|A|2279
6T4Q|1|C1|A|2280
6T4Q|1|C1|A|2281
6T4Q|1|C1|U|2282
6T4Q|1|C1|G|2283
6T4Q|1|C1|C|2284
6T4Q|1|C1|C|2285
6T4Q|1|C1|U|2286
6T4Q|1|C1|C|2287
6T4Q|1|C1|G|2288
*
6T4Q|1|C1|C|2304
6T4Q|1|C1|G|2305
6T4Q|1|C1|C|2306
6T4Q|1|C1|G|2307

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

60S ribosomal protein L41-A