IL_6T4Q_107

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6T4Q|1|C1|G|2945, 6T4Q|1|C1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_107 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0722

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6T4Q|1|C1|C|2879
6T4Q|1|C1|U|2880
6T4Q|1|C1|C|2881
*
6T4Q|1|C1|G|2943
6T4Q|1|C1|U|2944
6T4Q|1|C1|G|2945
6T4Q|1|C1|A|2946
6T4Q|1|C1|G|2947

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 8

nascent chain

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23-A