IL_6T4Q_117

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6T4Q|1|C1|U|3056, 6T4Q|1|C1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_117 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0836

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6T4Q|1|C1|U|3054
6T4Q|1|C1|U|3055
6T4Q|1|C1|U|3056
6T4Q|1|C1|U|3057
6T4Q|1|C1|U|3058
6T4Q|1|C1|G|3059
*
6T4Q|1|C1|C|3084
6T4Q|1|C1|G|3085
6T4Q|1|C1|A|3086
6T4Q|1|C1|A|3087
6T4Q|1|C1|G|3088

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24-A

Chain Ld

60S ribosomal protein L31-A