IL_6T4Q_132

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

6T4Q|1|C1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_132 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0756

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

6T4Q|1|C1|U|3332
6T4Q|1|C1|G|3333
6T4Q|1|C1|U|3334
6T4Q|1|C1|A|3335
6T4Q|1|C1|A|3336
6T4Q|1|C1|G|3337
*
6T4Q|1|C1|C|3367
6T4Q|1|C1|U|3368
6T4Q|1|C1|G|3369
6T4Q|1|C1|A|3370
6T4Q|1|C1|G|3371

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24-A

Chain Ld

60S ribosomal protein L31-A