IL_6T4Q_153

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6T4Q|1|C2|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_153 not in the Motif Atlas

Geometric match to IL_5F9R_003

Geometric discrepancy: 0.3832

The information below is about IL_5F9R_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6T4Q|1|C2|C|275
6T4Q|1|C2|C|276
*
6T4Q|1|C2|G|279
6T4Q|1|C2|U|280
6T4Q|1|C2|G|281

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24-A

Chain SG

40S ribosomal protein S6-A