IL_6T4Q_158

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_158 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2606

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6T4Q|1|C2|C|411
6T4Q|1|C2|A|412
6T4Q|1|C2|U|413
*
6T4Q|1|C2|A|420
6T4Q|1|C2|A|421
6T4Q|1|C2|G|422

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein L23-A

Chain SG

40S ribosomal protein S6-A