3D structure

PDB id
6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
AU*AAU
Length
5 nucleotides
Bulged bases
6T4Q|1|C2|A|506
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T4Q_162 not in the Motif Atlas
Homologous match to IL_4V88_409
Geometric discrepancy: 0.4205
The information below is about IL_4V88_409
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

6T4Q|1|C2|A|481
6T4Q|1|C2|U|482
*
6T4Q|1|C2|A|505
6T4Q|1|C2|A|506
6T4Q|1|C2|U|507

Current chains

Chain C2
18S rRNA

Nearby chains

Chain SJ
40S ribosomal protein S9-A
Chain Se
40S ribosomal protein S30-A

Coloring options:


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