IL_6T4Q_183
3D structure
- PDB id
- 6T4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUCAG*CUUGGAUU
- Length
- 13 nucleotides
- Bulged bases
- 6T4Q|1|C2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T4Q_183 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1444
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6T4Q|1|C2|G|895
6T4Q|1|C2|U|896
6T4Q|1|C2|C|897
6T4Q|1|C2|A|898
6T4Q|1|C2|G|899
*
6T4Q|1|C2|C|910
6T4Q|1|C2|U|911
6T4Q|1|C2|U|912
6T4Q|1|C2|G|913
6T4Q|1|C2|G|914
6T4Q|1|C2|A|915
6T4Q|1|C2|U|916
6T4Q|1|C2|U|917
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SB
- 40S ribosomal protein S1-A
- Chain SO
- 40S ribosomal protein S14-B
Coloring options: