IL_6T4Q_206

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

6T4Q|1|C2|A|1346, 6T4Q|1|C2|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_206 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1481

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6T4Q|1|C2|A|1345
6T4Q|1|C2|A|1346
6T4Q|1|C2|U|1347
6T4Q|1|C2|A|1348
*
6T4Q|1|C2|U|1377
6T4Q|1|C2|U|1378
6T4Q|1|C2|C|1379
6T4Q|1|C2|U|1380

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SQ

40S ribosomal protein S16-A

Chain SU

40S ribosomal protein S20