IL_6T59_019

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_019 not in the Motif Atlas

Geometric match to IL_4PHY_003

Geometric discrepancy: 0.3702

The information below is about IL_4PHY_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6T59|1|54|G|443
6T59|1|54|G|444
6T59|1|54|U|445
6T59|1|54|C|446
*
6T59|1|54|G|1300
6T59|1|54|C|1301
6T59|1|54|U|1302
6T59|1|54|A|1303
6T59|1|54|C|1304

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 84

5.8S ribosomal RNA; 5.8S rRNA

Chain e3

eL32

Chain f3

eL33