IL_6T59_022

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGAG*CACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_022 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2625

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6T59|1|54|G|461
6T59|1|54|G|462
6T59|1|54|A|463
6T59|1|54|G|464
*
6T59|1|54|C|691
6T59|1|54|A|692
6T59|1|54|C|693
6T59|1|54|C|694

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain r3

eL28