IL_6T59_026

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6T59|1|54|G|666, 6T59|1|54|A|667, 6T59|1|54|C|668

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_026 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2519

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

6T59|1|54|G|487
6T59|1|54|G|488
*
6T59|1|54|C|665
6T59|1|54|G|666
6T59|1|54|A|667
6T59|1|54|C|668
6T59|1|54|C|669

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain Q3

eL18

Chain r3

eL28