IL_6T59_034

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

6T59|1|54|C|738, 6T59|1|54|C|738|||A, 6T59|1|54|C|924, 6T59|1|54|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_034 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2345

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6T59|1|54|C|737
6T59|1|54|C|738
6T59|1|54|C|738|||A
6T59|1|54|G|739
*
6T59|1|54|C|923
6T59|1|54|C|924
6T59|1|54|C|925
6T59|1|54|G|926

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain M3

Ribosomal protein L14