IL_6T59_051

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_051 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0816

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6T59|1|54|C|1551
6T59|1|54|G|1552
6T59|1|54|A|1553
6T59|1|54|A|1554
6T59|1|54|G|1555
*
6T59|1|54|U|1572
6T59|1|54|G|1573
6T59|1|54|G|1574
6T59|1|54|A|1575
6T59|1|54|G|1576

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain R3

eL19

Chain p3

eL43