IL_6T59_055

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_055 not in the Motif Atlas

Homologous match to IL_8C3A_037

Geometric discrepancy: 0.121

The information below is about IL_8C3A_037

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T59|1|54|U|1671
6T59|1|54|U|1672
6T59|1|54|U|1673
*
6T59|1|54|A|1682
6T59|1|54|U|1683
6T59|1|54|A|1684

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain Q3

eL18

Chain T3

eL21

Chain a3

uL15

Chain b3

eL29