3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
CGGUAA*UAAAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T59_059 not in the Motif Atlas
Geometric match to IL_7A0S_027
Geometric discrepancy: 0.1819
The information below is about IL_7A0S_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_81631.1
Basepair signature
cWW-L-R-cSH-R-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

6T59|1|54|C|1732
6T59|1|54|G|1733
6T59|1|54|G|1734
6T59|1|54|U|1735
6T59|1|54|A|1736
6T59|1|54|A|1737
*
6T59|1|54|U|1792
6T59|1|54|A|1793
6T59|1|54|A|1794
6T59|1|54|A|1795
6T59|1|54|U|1796
6T59|1|54|G|1797

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain 74
5S ribosomal RNA; 5S rRNA
Chain D3
60S ribosomal protein L5
Chain F3
Ul30
Chain I3
60S ribosomal protein L10
Chain S3
eL20
Chain T3
eL21

Coloring options:


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