IL_6T59_060

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_060 not in the Motif Atlas

Geometric match to IL_5TBW_039

Geometric discrepancy: 0.1216

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6T59|1|54|A|1737
6T59|1|54|A|1738
*
6T59|1|54|U|1790
6T59|1|54|U|1791
6T59|1|54|U|1792

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 74

5S ribosomal RNA; 5S rRNA

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10

Chain T3

eL21