IL_6T59_063

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_063 not in the Motif Atlas

Homologous match to IL_5TBW_042

Geometric discrepancy: 0.1551

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6T59|1|54|A|1749
6T59|1|54|G|1750
6T59|1|54|A|1751
*
6T59|1|54|U|1779
6T59|1|54|A|1780
6T59|1|54|U|1781

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 74

5S ribosomal RNA; 5S rRNA

Chain D3

60S ribosomal protein L5

Chain I3

60S ribosomal protein L10