IL_6T59_071

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGC*GG

Length

5 nucleotides

Bulged bases

6T59|1|54|G|1919

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_071 not in the Motif Atlas

Homologous match to IL_8GLP_077

Geometric discrepancy: 0.0841

The information below is about IL_8GLP_077

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

6T59|1|54|U|1918
6T59|1|54|G|1919
6T59|1|54|C|1920
*
6T59|1|54|G|2063
6T59|1|54|G|2064

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain F3

Ul30

Chain M3

Ribosomal protein L14

Chain O3

uL13

Chain S3

eL20

Chain f3

eL33