IL_6T59_108

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_108 not in the Motif Atlas

Homologous match to IL_5TBW_089

Geometric discrepancy: 0.1201

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6T59|1|54|G|3780
6T59|1|54|C|3781
*
6T59|1|54|G|3811
6T59|1|54|C|3812
6T59|1|54|A|3813
6T59|1|54|U|3814

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain n3

60s ribosomal protein l41