IL_6T59_111

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6T59|1|54|A|3901, 6T59|1|54|C|4560

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_111 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.105

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6T59|1|54|G|3900
6T59|1|54|A|3901
6T59|1|54|A|3902
*
6T59|1|54|U|4558
6T59|1|54|A|4559
6T59|1|54|C|4560
6T59|1|54|C|4561

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 1

Tubulin Beta

Chain B3

uL3

Chain P3

uL22