IL_6T59_128

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6T59|1|54|A|4518, 6T59|1|54|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_128 not in the Motif Atlas

Homologous match to IL_5TBW_109

Geometric discrepancy: 0.1275

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6T59|1|54|C|4458
6T59|1|54|U|4459
*
6T59|1|54|A|4517
6T59|1|54|A|4518
6T59|1|54|C|4519
6T59|1|54|G|4520

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13

Chain V3

Ribosomal protein L23