IL_6T59_134

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6T59|1|54|C|4720

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_134 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3179

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6T59|1|54|C|4582
6T59|1|54|C|4583
6T59|1|54|A|4584
6T59|1|54|U|4585
*
6T59|1|54|A|4717
6T59|1|54|G|4718
6T59|1|54|G|4719
6T59|1|54|C|4720
6T59|1|54|G|4721

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain O3

uL13