IL_6T59_156

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GCC*GAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_156 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.3963

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

6T59|1|74|G|27
6T59|1|74|C|28
6T59|1|74|C|29
*
6T59|1|74|G|48
6T59|1|74|A|49
6T59|1|74|A|50
6T59|1|74|G|51
6T59|1|74|C|52

Current chains

Chain 74

5S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain J3

Ribosomal protein L11