IL_6T59_168

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6T59|1|54|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_168 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0813

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6T59|1|54|G|2847
6T59|1|54|G|2848
6T59|1|54|A|2849
6T59|1|54|A|2850
6T59|1|54|G|2851
6T59|1|54|U|2852
6T59|1|54|C|2853
6T59|1|54|G|2854
6T59|1|54|G|2855
*
6T59|1|54|C|3837
6T59|1|54|U|3838
6T59|1|54|G|3839
6T59|1|54|U|3840
6T59|1|54|C|3841

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain V3

Ribosomal protein L23