IL_6T59_174

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

6T59|1|54|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_174 not in the Motif Atlas

Geometric match to IL_8P9A_328

Geometric discrepancy: 0.2753

The information below is about IL_8P9A_328

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6T59|1|54|G|4347
6T59|1|54|A|4348
6T59|1|54|C|4349
6T59|1|54|C|4350
*
6T59|1|54|G|4364
6T59|1|54|C|4365

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain Q3

eL18

Chain a3

uL15

Chain o3

eL42