IL_6T7I_012

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_012 not in the Motif Atlas

Geometric match to IL_7A0S_073

Geometric discrepancy: 0.2923

The information below is about IL_7A0S_073

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

6T7I|1|C1|U|177
6T7I|1|C1|U|178
*
6T7I|1|C1|A|238
6T7I|1|C1|G|239
6T7I|1|C1|U|240
6T7I|1|C1|G|241

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13-A

Chain Lh

60S ribosomal protein L35-A

Chain Lj

60S ribosomal protein L37-A