IL_6T7I_047
3D structure
- PDB id
- 6T7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T7I_047 not in the Motif Atlas
- Geometric match to IL_5TBW_049
- Geometric discrepancy: 0.1184
- The information below is about IL_5TBW_049
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
6T7I|1|C1|U|1173
6T7I|1|C1|G|1174
6T7I|1|C1|C|1175
6T7I|1|C1|C|1176
6T7I|1|C1|G|1177
6T7I|1|C1|G|1178
6T7I|1|C1|A|1179
6T7I|1|C1|A|1180
*
6T7I|1|C1|U|1325
6T7I|1|C1|A|1326
Current chains
- Chain C1
- 25S ribosomal RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L7-A
- Chain LO
- 60S ribosomal protein L16-A
- Chain LS
- 60S ribosomal protein L20-A
- Chain Lf
- 60S ribosomal protein L33-A
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