IL_6T7I_087

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6T7I|1|C1|A|2281, 6T7I|1|C1|C|2287, 6T7I|1|C1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_087 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0903

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6T7I|1|C1|C|2277
6T7I|1|C1|C|2278
6T7I|1|C1|A|2279
6T7I|1|C1|A|2280
6T7I|1|C1|A|2281
6T7I|1|C1|U|2282
6T7I|1|C1|G|2283
6T7I|1|C1|C|2284
6T7I|1|C1|C|2285
6T7I|1|C1|U|2286
6T7I|1|C1|C|2287
6T7I|1|C1|G|2288
*
6T7I|1|C1|C|2304
6T7I|1|C1|G|2305
6T7I|1|C1|C|2306
6T7I|1|C1|G|2307

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

60S ribosomal protein L41-B