IL_6T7I_131

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

6T7I|1|C1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_131 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.1085

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

6T7I|1|C1|U|3332
6T7I|1|C1|G|3333
6T7I|1|C1|U|3334
6T7I|1|C1|A|3335
6T7I|1|C1|A|3336
6T7I|1|C1|G|3337
*
6T7I|1|C1|C|3367
6T7I|1|C1|U|3368
6T7I|1|C1|G|3369
6T7I|1|C1|A|3370
6T7I|1|C1|G|3371

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24-B

Chain Ld

60S ribosomal protein L31-A