IL_6T7I_176

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6T7I|1|C2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_176 not in the Motif Atlas

Geometric match to IL_3SJ2_002

Geometric discrepancy: 0.2368

The information below is about IL_3SJ2_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6T7I|1|C2|G|868
6T7I|1|C2|A|869
6T7I|1|C2|C|870
*
6T7I|1|C2|G|957
6T7I|1|C2|U|958
6T7I|1|C2|U|959
6T7I|1|C2|U|960

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27-A