IL_6T7I_241
3D structure
- PDB id
- 6T7I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6T7I|1|C2|G|1228
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T7I_241 not in the Motif Atlas
- Geometric match to IL_4V88_447
- Geometric discrepancy: 0.3415
- The information below is about IL_4V88_447
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_34780.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6T7I|1|C2|A|1224
6T7I|1|C2|U|1225
6T7I|1|C2|A|1226
6T7I|1|C2|A|1227
6T7I|1|C2|G|1228
6T7I|1|C2|G|1229
6T7I|1|C2|A|1230
6T7I|1|C2|U|1231
6T7I|1|C2|U|1232
6T7I|1|C2|G|1233
*
6T7I|1|C2|C|1252
6T7I|1|C2|U|1253
6T7I|1|C2|U|1254
6T7I|1|C2|G|1255
6T7I|1|C2|A|1256
6T7I|1|C2|U|1257
6T7I|1|C2|U|1258
6T7I|1|C2|U|1259
Current chains
- Chain C2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10-A
- Chain SM
- 40S ribosomal protein S12
- Chain Sd
- 40S ribosomal protein S29-A
- Chain Sf
- Ubiquitin-40S ribosomal protein S31
Coloring options: