IL_6T7I_244

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7I_244 not in the Motif Atlas

Homologous match to IL_8P9A_464

Geometric discrepancy: 0.5756

The information below is about IL_8P9A_464

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_55553.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6T7I|1|C2|U|1688
6T7I|1|C2|A|1689
6T7I|1|C2|G|1690
*
6T7I|1|C2|C|1711
6T7I|1|C2|A|1712
6T7I|1|C2|G|1713

Current chains

Chain C2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24-B