IL_6T7T_043

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

6T7T|1|C1|C|1016, 6T7T|1|C1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_043 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2676

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6T7T|1|C1|U|1014
6T7T|1|C1|U|1015
6T7T|1|C1|C|1016
6T7T|1|C1|C|1017
6T7T|1|C1|G|1018
*
6T7T|1|C1|U|1034
6T7T|1|C1|G|1035
6T7T|1|C1|A|1036

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LJ

60S ribosomal protein L11-B