IL_6T7T_087

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_087 not in the Motif Atlas

Geometric match to IL_5TBW_088

Geometric discrepancy: 0.1375

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6T7T|1|C1|U|2211
6T7T|1|C1|C|2212
6T7T|1|C1|A|2213
6T7T|1|C1|A|2214
6T7T|1|C1|A|2215
6T7T|1|C1|G|2216
6T7T|1|C1|U|2217
*
6T7T|1|C1|A|2228
6T7T|1|C1|A|2229
6T7T|1|C1|C|2230
6T7T|1|C1|C|2231
6T7T|1|C1|A|2232
6T7T|1|C1|A|2233
6T7T|1|C1|G|2234

Current chains

Chain C1

25S rRNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain Li

60S ribosomal protein L36-A

Chain Lo

60S ribosomal protein L42-A