IL_6T7T_089
3D structure
- PDB id
- 6T7T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of yeast 80S ribosome stalled on poly(A) tract.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 6T7T|1|C1|A|2281, 6T7T|1|C1|C|2287, 6T7T|1|C1|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6T7T_089 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.1207
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6T7T|1|C1|C|2277
6T7T|1|C1|C|2278
6T7T|1|C1|A|2279
6T7T|1|C1|A|2280
6T7T|1|C1|A|2281
6T7T|1|C1|U|2282
6T7T|1|C1|G|2283
6T7T|1|C1|C|2284
6T7T|1|C1|C|2285
6T7T|1|C1|U|2286
6T7T|1|C1|C|2287
6T7T|1|C1|G|2288
*
6T7T|1|C1|C|2304
6T7T|1|C1|G|2305
6T7T|1|C1|C|2306
6T7T|1|C1|G|2307
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ln
- 60S ribosomal protein L41-A
Coloring options: