IL_6T7T_090

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_090 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.1139

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6T7T|1|C1|G|2391
6T7T|1|C1|C|2392
6T7T|1|C1|G|2393
6T7T|1|C1|G|2394
*
6T7T|1|C1|U|2986
6T7T|1|C1|A|2987
6T7T|1|C1|C|2988

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L16-A

Chain LP

60S ribosomal protein L17-A