IL_6T7T_127

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_127 not in the Motif Atlas

Geometric match to IL_6MWN_005

Geometric discrepancy: 0.1211

The information below is about IL_6MWN_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6T7T|1|C1|C|3235
6T7T|1|C1|U|3236
6T7T|1|C1|U|3237
6T7T|1|C1|G|3238
*
6T7T|1|C1|C|3249
6T7T|1|C1|U|3250
6T7T|1|C1|U|3251
6T7T|1|C1|G|3252

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LO

60S ribosomal protein L16-A