IL_6T7T_135

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GUUGU

Length

7 nucleotides

Bulged bases

6T7T|1|C1|U|3354, 6T7T|1|C1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_135 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.271

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6T7T|1|C1|G|3348
6T7T|1|C1|C|3349
*
6T7T|1|C1|G|3353
6T7T|1|C1|U|3354
6T7T|1|C1|U|3355
6T7T|1|C1|G|3356
6T7T|1|C1|U|3357

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LU

60S ribosomal protein L22-A

Chain SI

40S ribosomal protein S8