IL_6T7T_166

3D structure

PDB id

6T7T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T7T_166 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.1971

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6T7T|1|C2|A|550
6T7T|1|C2|G|551
6T7T|1|C2|G|552
6T7T|1|C2|G|553
6T7T|1|C2|C|554
6T7T|1|C2|A|555
6T7T|1|C2|A|556
6T7T|1|C2|G|557
*
6T7T|1|C2|C|587
6T7T|1|C2|U|588

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A